Protein Database
Start Date: September 2014
End Date: Ongoing Description: Web Scraping of the RCSA Protein Database to develop statistical significance between proposed models in attempt to develop models of interactions with proteins and simulate interactions The majority of this project was written in Python, and the computation was written in C++. This project also consists of model the proteins via Pymol plugins. Some Images are depicted below.
Link to GitHub Repo
Future Steps: Continue to incorporate machine learning algorithms to determine structure of every protein with statistical significance by comparison similar verified structures, as well as similarities between proposed structures.
Create modelling and simulation, build supercomputer(GPU bank) to appropriately attempt to simulate a few picoseconds of protein interaction in an aqueous environment.